rmarkdownexample

R Markdown

This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see http://rmarkdown.rstudio.com.

When you click the Knit button a document will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this:

summary(cars)

##      speed           dist       
##  Min.   : 4.0   Min.   :  2.00  
##  1st Qu.:12.0   1st Qu.: 26.00  
##  Median :15.0   Median : 36.00  
##  Mean   :15.4   Mean   : 42.98  
##  3rd Qu.:19.0   3rd Qu.: 56.00  
##  Max.   :25.0   Max.   :120.00

Including Plots

You can also embed plots, for example:

Note that the echo = FALSE parameter was added to the code chunk to prevent printing of the R code that generated the plot.

1. To start using R Markdown create a new .Rmd file: File - New File - R Markdown

2. If you chose the PDF format, install latex:

install.packages('tinytex')
tinytex::install_tinytex()  # install TinyTeX

3. Three parts of the file:

• a YAML-header
• text written using Markdown
• chunks of code

2+2

## [1] 4

For chunks you can specify some parameters:

• echo: if you want to display the code

• message and warning

• eval: if you want to execute the code

Put this at the beginning of the document if you want to specify parameters for all the chunks:

knitr::opts_chunk$set(echo = TRUE, message = FALSE, warning = FALSE)

4. Help – Markdown Quick Reference

5. Handout on Markdown

6. Dynamic tables

## ── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──

## ✓ ggplot2 3.3.5     ✓ purrr   0.3.4
## ✓ tibble  3.1.4     ✓ dplyr   1.0.7
## ✓ tidyr   1.1.3     ✓ stringr 1.4.0
## ✓ readr   2.0.1     ✓ forcats 0.5.1

## ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
## x dplyr::filter() masks stats::filter()
## x dplyr::lag()    masks stats::lag()

## New names:
## * `` -> ...1

## Rows: 734 Columns: 11

## ── Column specification ────────────────────────────────────────────────────────
## Delimiter: ","
## chr (8): name, Gender, Eye color, Race, Hair color, Publisher, Skin color, A...
## dbl (3): ...1, Height, Weight

## 
## ℹ Use `spec()` to retrieve the full column specification for this data.
## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.

## Warning: One or more parsing issues, see `problems()` for details

7. Plots

height_weight_gg <- heroes %>%
  mutate(Publisher = ifelse(Publisher %in% c("Marvel Comics", "DC Comics"), 
                            Publisher,
                            "Other publishers")) %>%
  filter(Weight < 700 & Height < 400) %>%
  ggplot(aes(x = Height, y = Weight)) +
  geom_point(aes(colour = Gender), alpha = 0.5) +
  coord_fixed() +
  facet_wrap(~Publisher)+
  theme_minimal()
height_weight_gg

library(plotly)

## 
## Attaching package: 'plotly'

## The following object is masked from 'package:ggplot2':
## 
##     last_plot

## The following object is masked from 'package:stats':
## 
##     filter

## The following object is masked from 'package:graphics':
## 
##     layout

ggplotly(height_weight_gg)